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4/28/2018

Of Science, God, Fish, and Bicycles

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In 1999 the secret “Wedge Document” was leaked to the world. This document outlined the master plan of the proponents of Intelligent Design to infiltrate the scientific establishment and make Intelligent Design a valid scientific notion worthy of being taught in school alongside the theory of evolution.
 
The governing goals of the plan were: “To defeat scientific materialism and its destructive moral, cultural, and political legacies”, and “To replace materialistic explanations with the theistic understanding that nature and human beings are created by God”.
 
However, the highflying expectations of the Intelligent Design movement were stopped cold by a 2005 ruling by a Pennsylvania judge that exposed Intelligent Design as nothing more than religion masquerading as science. This was the last of a string of legal defeats that creationist suffered in the United States.

One of the things that caught my attention about the Wedge Document is that creationists apparently object to materialistic explanations of how life on Earth arose and evolved. This greatly puzzles me because it is widely understood that science is incapable of any other type of explanations! And this is not due to science being co-opted by materialists who want to destroy God and religion.
 
Let me give you an example. Suppose you throw a bicycle in a pond that contains several fish. After a while the fish will probably swim around the bicycle, but they will definitely never ride it. Can you conclude that the fish rejected the bicycle? Of course not, because it is not in the nature of fish to ride bicycles. Following this analogy, we must understand that the whole concept of a God, or any proposal that involves theistic (related to a God) intervention, is not in the nature of science to analyze or comprehend. Science cannot elaborate hypotheses that involve divine intervention to explain what happens in the world, because they are not testable. Only materialistic explanations are testable, and here is where the problem arises.
 
Creationist believe that the Earth is 10,000 years old, that life on Earth appeared in one creation event involving 7 days, that there was a universal flood, and that the first man was created from clay directly by God. Of course science has found that the Earth is billions of years old, that the diversity of life on Earth did not appear in a span of 7 days, that there was no universal flood, and that humans evolved from other life forms. Creationists view these notions as an attack on their beliefs, and they are scandalized when this knowledge is taught in schools. Are scientists doing this to reject the literal creation story of the book of Genesis in the Bible, discredit theism, and impose materialism?
 
The answer is no. Scientists ask questions and provide answers based on the evidence. Of course, a particular answer may conflict with your beliefs, but what are scientists to do if that is where the evidence leads them? There is no ill will, no master plan to discredit theism and impose materialism, just the search for truth. There are some scientists, such as Richard Dawkins, who disavow religion and advocate exclusively for materialistic explanations regarding the origin of life and humanity, and that is their prerogative as freethinking individuals in an open society. But a large number of scientists from many cultures are believers, and they see no conflict between science and religion. However, what these scientists understand is that religious books such as the Bible should not be used as textbooks of natural history. These scientists subscribe to the maxim attributed to Galileo that the Bible teaches how to go to heaven, not how the heavens go.
 
Science is the best method we have to find the truth about the behavior of matter and energy in the world around us. In this sense, when it comes to the natural world, science can help us in deciding what to believe or how to believe it. But science has limitations. It cannot tell us what is right or wrong, it cannot give us the guidance we seek as to the best way to live our lives from a moral and ethical point of view, it cannot provide us with values. This is the realm of religion, faith, and belief. These different areas of expertise that the late Harvard paleontologist Stephen Jay Gould called non-overlapping magisteria are necessary for the education of balanced human beings, and they should be kept separate. Science should be taught as science and religion should be taught as religion.
 
Creationist should, to quote a person whose teachings they know very well, “render unto Caesar the things that are Caesar's, and unto God the things that are God's”.


The tittle page image of the Wedge Document is in the public domain.

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4/7/2018

How Do We Know There is Not a Conspiracy?

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I have been recently reading about Flat Earthers. These are individuals who claim that the real shape of the Earth is flat. If you go to social media outlets such as Twitter and type in hashtags such as #flatearth you will see the accounts of a number of these people. One thing that struck me about Flat Earthers is that quite a number of them are sophisticated individuals who are well versed in technical jargon and can argue with you forever or outpost you on a discussion board. There is even a society called the Flat Earth Society dedicated to promoting the “truth” of the flat earth. It held the first International Flat Earth conference in 2017.
 
But you may ask: how do Flat Earthers explain all the pictures of Earth taken from space that show it’s a sphere? The short answer: a conspiracy! Flat Earthers believe that the public is being deceived by the government which has bribed or coerced astronauts into lying, faked the moon landing, and created bogus pictures of a spherical Earth.
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​Admittedly, the case of Flat Earthers is an extreme example. You could even say that they are at the fringe of antiscience groups such as climate change deniers, antivaxers, or creationists. But from their rhetoric, I think we can draw one valid question that is worth addressing: How do we know there is no conspiracy? The government has been shown to have lied in the past, as well as have many other institutions and organizations. How do we know they are not doing it in these cases?
 
The answer is diversity: diversity in scientists, and diversity in methodology.
 
I have mentioned in a previous post the famous case of N-rays, the mysterious radiation discovered by the French scientist René Blondlot, and confirmed by other French scientists, that turned out to be nothing but a case of self-delusion. During the course of the investigation of N-Rays, at one point it became evident that almost all of the positive results were coming out of French labs. When all the positive results originate from one state, or organization, or lab, we should be concerned. Diversity in the scientists that practice science is a safeguard against bias and mistakes.
 
In another post I have also mentioned the case of polywater, a seemingly new form of water with many potential applications. Many scientists set to work on polywater and they were able to obtain the same results reported by other scientists (the results were reproducible). Nonetheless, polywater was eventually demonstrated to be false. The positive results were due to the fact that all the scientists were using the same methodology and making the same mistake! When all the positive results come from scientists using the same methodology, and these results can’t be supported by any other methods, there may be a problem. Diversity in the methodology employed in research is also a safeguard against bias and mistakes.
 
Thus when many scientists from different nations, ethnicities, religions, political beliefs, scientific traditions, etc. study a problem employing different approaches and methodologies and come up with the same results, you can infer not only that the chance that there is a conspiracy going on is vanishingly small, but also that there is a very good chance that the theories they have generated have grasped important aspects of reality.
 
For the conspiracy that the Flat Earthers claim to exist to be true, it would have to involve not only the government of the United States and astronauts, scientists, and private contractors involved in the space program, but also similar numbers of people in the other 5 space agencies that possess launch capabilities (those of India, Europe, China, Japan, and Russia), as well as those of the 50 plus countries that have satellites in space, not to mention individuals involved in space research in all these countries. Additionally, the roundness of the Earth has been demonstrated by many methods. If you want to argue for a flat Earth, you might as well argue that we are all living in The Matrix.
 
However, in their conspiracy claims Flat Earthers are in good company. The theories that the global climate is warming and that humans are responsible for it, or that vaccines do not produce autism, are the product of science involving a diversity of researchers and methods, and yet they are also rejected by many people claiming that they are part of massive conspiracies.
 
To all individuals out there espousing these conspiracy theories about science and scientists, I want to suggest that you consider a radical and revolutionary idea. This is that maybe, just maybe, the vast majority of scientists are interested in the truth, they act in good faith, and that the theories they have generated are correct!


The image of a flat Earth by Trekky0623 was modified under a Creative Commons Attribution-Share Alike 4.0 International license. The image of the real Earth from NASA is in the public domain.

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11/18/2017

A Case of Intelligent Design!

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​Creationists often claim that the complexity of life in our planet is evidence of a creator. They argue that the perfection observed in the many structures that make up the bodies of organisms can only be explained by the presence of a designer. Scientists, however, have repeatedly pointed out that the design of organisms does not have to be perfect, rather just good enough to allow them to survive and reproduce. In fact, scientists have found many flaws in the design of organisms which point to them being the result of a natural process. The critics of creation science argue that if these flawed structures had been designed by a creator, said entity would indeed be a very sloppy one.

Most of the debate regarding intelligent design seems to be centered on macroscopic structures such as the eye, but what if we focus on something much smaller and more fundamental? I am talking about DNA, the molecule that carries the blueprint of life. Can we find any evidence of intelligent design in DNA? To examine this let’s look at the organization of genes. Genes are the actual segments of DNA that carry the instructions that are used to make life happen. These genes have specific functions. Some are involved in energy metabolism, others are involved in the synthesis of proteins, others are involved in the transmission of signals, and so on. So my question is: how would a creator, as opposed to a natural process, organize the genes in the DNA molecule?

To use an analogy, let’s think of a person who has 500 books and wants to place them into shelves. A reasonable person would probably organize books together by categories such as detective stories, romance, science fiction, horror and so forth. This would take a certain amount of effort and discernment. On the other hand, a sloppy or lazy person, or a person employing a random system to distribute books would probably place them in the shelves with no discernible order. Does the DNA of even a single living thing display evidence of intelligence being involved in the organization of genes in their DNA molecules?

Well, you will be surprised to know that I have found one such example! In the figure below I present the DNA of a species of bacteria (this particular bacterial DNA is circular). As you can see, as in the above analogy of the books in the shelves, the genes are neatly organized into categories. All the genes involved in DNA metabolism (in yellow) are in one area of the DNA molecule, whereas all the genes involved in making transport and binding proteins (in purple) are in another area, and the same is true for genes with other functions and even genes that we have not yet classified or whose function is unknown to us!
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​So there can be no question about it. Here is irrefutable evidence of intelligent design. No natural process can account for the existence of this molecule. This DNA was designed by an entity with a consciousness (and a very well developed sense of tidiness). When it comes to the process that made the DNA of this bacterial species come into being, creationists are 100% right!

Unfortunately the designer of this bacterial DNA molecule is not God but a scientist named Craigh Venter. Dr. Venter and his team were trying to design a minimal bacterial genome to study the functions of genes that are required for life, and they wanted all genes organized in discrete units that they could move around. So (much in the same way that we defragment a computer to organize all the information that ends up scattered over its memory banks) they proceeded to defragment the bacterial DNA generating the one presented above. But, how did the initial bacterial DNA look? See the original figure below.
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​The original DNA is in the left hand side. The seemingly random scattershot organization of its genes is not unique to this bacterial DNA. All DNAs from all species of living things sequenced so far show this lack of organization of the genetic information into any overall cohesive pattern.

So now you know how real intelligent design looks: it looks like nothing that can be found in the natural world.


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Illustrations taken from the presentation From Synthetic Life to Human Longevity by Dr. Craig Venter's at the Inaugural Scientific Symposium of the Center for Systems Biology Dresden (CSBD) on June 1st, 2017. The use of these illustrations is covered under the United States Copyright Law of Fair Use (Title 17 of the United States Code, Section 107).

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10/15/2017

The Gift of Science

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When asked about what science has done for humanity many people would probably mention medical advances. Indeed science has allowed us to create vaccines, antibiotics, drugs, surgical methods, and many other things to treat human disease and improve human health. There are millions of people today upon the face of the earth (including yours truly) who would not be here if it weren’t for these medical advances. But this is not the most important thing that science has done for us.

Other people would allude to the technological advances that science has made possible that have improved our lives. Inventions like refrigerators, air conditioners, cars, planes, phones, computers, and many other things have greatly improved our lives and increased our freedom and abilities. But this is not the most important thing science has done for us.

Even others will mention the way science has opened our eyes to the mystery and beauty of realms previously unseen by us such as when we contemplate images of faraway worlds relayed to us by the probes we have sent into space, or the images of the life of cells and other organisms in the microscopic world. But this is not the most important thing science has done for us.

So what is it?
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Let me give you a hint. Recently millions of Americans watched an eclipse of the sun. By all accounts it was a festive event where people expressed amazement at the natural phenomenon. But here is the key thing. No one ran to hide in their basement during the eclipse. No one felt that the eclipse was a “bad omen”. No people were sacrificed to “prevent the moon from swallowing the sun”. The eclipse did not influence domestic or foreign policy. It was just a celestial body (the moon) transiting in front of another (the sun) and casting its shadow on the earth. Amazing? Fantastic? Incredible? Yes. Scary? Foreboding? No.

Figured it out?

This is the gift of science. It has given us information about what things are and what they aren’t; about what can happen and what can’t, and about how things work, and why. This allows us to live better lives free of the shackles of superstition. It allows us to act rationally in response to the changing world about us and optimize our lives. And why is this? Because ignorance in the face of occurrences that may have an impact on our lives generates fear and fear is the begetter of some of the most barbaric behaviors that humanity has ever witnessed.
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Ever read about when the black plague decimated most of medieval Europe? The best minds of the period could not get beyond explanations such as an “unfavorable conjunction of planets” or an “infected air”. Among other explanations was a divine punishment for sinfulness. The sheer panic and terror led family members to abandon each other, doctors and priests to desert their posts, and mobs of people to target those who were different such as gypsies or Jews, who were exterminated in many places. After hundreds of years and many outbreaks, it was finally worked out that the plague was caused by a bacterium (Yersinia pestis) which is transmitted by fleas, which in turn are carried by animals like rats. Scary? Yes, but just merely a natural occurrence that is well within our power to control. Today there are still cases of plague, but they can be kept to a minimum through sanitation and easily treated with antibiotics.

When human beings are concerned (or made to be concerned) about threats real or imaginary, they will believe anything and do anything, and this weakness is often successfully exploited by those among the “powers that be” who want to implement their social or corporate agendas, further their standing or careers, or simply profit. Furthermore, because science is so successful at finding the truth, these “powers that be” have understood that a very important part of their plan has to be the delegitimization of science.

Thus the anti-vaccination movement claims that pro-vaccination scientists are controlled by the vaccine industry. The anti-climate change movement claims that climate change scientists are controlled by the liberal science funding agencies. The creationist movement claims that evolution science is part of the war on Christianity. The alternative therapies lobby claims that the medical establishment is preventing citizens from using inexpensive and equally effective treatments. The gun lobby has successfully prevented government funds from being used to study gun violence claiming that it would be part of a slippery slope towards the erosion of key constitutional rights.

The above highlights a sad truth about a gift. A gift is a two part process. The first part occurs when it is given, but the second part involves receiving it. In our complex world where fantasy and folly can de facto become a reality if enough people believe them, science can be successful in transmitting us its gift only to the extent that its discoveries are accepted by individuals and societies.


Eclipse: CCO Creative commons license “Free for commercial use. No attribution required”. The black death by Leo Reynolds, Attribution: NonCommercial-ShareAlike 2.0 Generic (CC BY-NC-SA 2.0) license.

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8/6/2017

Science Can Be Right Because It Can Be Wrong!

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I once attended a presentation given by the Dalai Lama to an audience of scientists. In this presentation he relayed an anecdote of something that happened during the years when he trained to be a monk. He said that one of his teachers had stated that the moon shone with its own light. Sometime later, the Dalai Lama learned about the knowledge that the moon does not emit a light of its own, but rather that it reflects light from the sun. So he had to go back and correct his teacher. The Dalai Lama used this as a stepping stone to go on to suggest that our beliefs must be tempered by science. In other words, if we believe something and science produces solid evidence against it, then we must stop believing in it.

To many people this would sound presumptuous. Why should science be the ultimate arbiter of truth? Isn’t science sometimes wrong? The answer is, of course, that science can be wrong, but as it turns out that is its strength. The reason that science is the best method we have to discover the truth about the behavior of matter and energy in the world that surrounds us is that, unlike other modalities of learning the truth, science can be wrong. Let me explain.

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The above notion was put forward by the great philosopher of science Karl Popper. Popper was striving to find a way to tell science apart from other non-scientific disciplines, and he came up with a brilliant solution which he called the “criteria for demarcation”. Science makes testable claims. And because the claims of science can be tested, they can be proven to be wrong! This is also called the “falsifiability criterion”. While non-scientific disciplines produce theories that cannot be proven wrong and thus can never be tested or challenged, truly scientific disciplines propose theories that can be tested and unambiguously proven to be wrong if in fact they are.

As an example, consider the case of polywater. This was a form of water that scientists were able to create inside small capillary tubes. This form of water had very different properties from regular water, and the international scientific community got really excited about its potential physical significance and applications. This went on until someone demonstrated that polywater was an unusual form of water because it was contaminated: it was dirty water! Thus the theory that polywater was a unique form of water was abandoned because it was challenged and proven false. Many scientific theories have met this fate, but this happened because they were testable. They could be proven to be false.

In contrast consider Creationism. This discipline has been challenged and proven false many times. Its proponents, rather than concluding that creationism is false, have proceeded to change the theory and reformulate it is a new guise over and over. Creationism cannot be proven wrong because its proponents are not willing to stake the viability of the theory on specific testable claims. Therefore creationism is not a scientific discipline. On the other hand consider the theory of evolution. This theory has been put to test many times from many different directions, and it has survived those challenges. Today evolution has become a pillar of the biological sciences, and scientist have moved on from discussing whether evolution is true or not to applying the tenets of evolution to many areas of science that are producing discoveries that are making our lives better.
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The above also highlights another quality of science: it is self-correcting. In the short run scientists may make mistakes and propose incorrect hypotheses, but these hypotheses will be challenged and, if they are false, they will be proven to be so.

Finally, I want to point out a real life practical application of the above knowledge that you can take away from having read this article. If you are ever witnessing a discussion where the arguments and counter arguments seem to go on forever and it is not clear who is right, just ask the following question: what evidence will convince you that you are wrong? If the parties involved in the discussion cannot unambiguously answer this question and commit themselves to changing their opinion based on whether such evidence is produced, then what you are witnessing is not a scientific discussion. This is not to say it is not an important discussion, but it does mean it will never be resolved based on evidence and facts.


The photograph of the Dalai Lama was taken by Christopher and is used under a Creative Commons license. The photograph of Karl Popper by Lucinda Douglas-Menzies is in the public domain. 

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